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Alumni

Former members of the Linding lab.

Research topics

New institution

Postdoctoral Researchers

Dr Craig Simpson (Canada)

  • Kinome Biology
  • Kinome Specificity Drift
  • Genome-scale screening
  • Chemical Biology
  • Tumour Biology

 

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Hospital for Sick Children, Toronto, Canada

Dr Xavier Robin (Switzerland)

  • Genome-scale Image Analysis
  • High-content screening
  • Non-linear Dimensionality Reduction
  • Algorithms
  • Genome-scale bioinformatics

 

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University of Basel, Switzerland

Dr Cristina Costa Santini (Brazil)

  • Complex Systems Modeling
  • Phenotypic Attractor States
  • Network Medicine
  • BRAF signaling
  • Network State Spaces
  • Massive scale modelling
  • JNK multivariate network dynamics
  • Genome Dynamics

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Celgene, Spain

Dr Jinho Kim (South Korea)

  • Evolution of Tyrosine Signaling
  • Cancer Drug Resistance
  • Cancer Genome Evolution
  • Modeling of Signaling Networks
  • JNK network evolution
  • Phospho-tyrosine Signaling
  • Functional Mutations in Cancer Signaling Networks
  • Drug-kinase Interactions in Perturbed Signaling Networks


Samsung Medical Center, South Korea

Graduate Students

Erwin M. Schoof (Holland)

  • Network Medicine Approaches targeting Cancer
  • Computational Modeling of Kinase-Substrate Networks
  • Global (Phospho-)Proteomics using Mass Spectrometry
  • Colon Cancer
  • Cancer Metastasis
  • Proteomics Workflows
  • Genome-scale Quantitation Methods
  • Evolution of phosphorylation

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EMBO Fellow at Princess Margaret Cancer Centre Toronto, CANADA

University Health Network

Lab of Prof Dr John Dick

Dr Pau Creixell (Barcelona)

  • Personalized & Tumor-specific Network Medicine
  • Cancer Functional Mutations in Signaling Networks
  • Signaling Network Attractors and Landscapes
  • Evolution of Signaling Networks
  • Ovarian Cancer
  • Next-generation sequencing
  • Genome Dynamics

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MIT, Cambridge, USA

Koch Institute for Integrative Cancer Research

Lab of Prof Dr Michael B. Yaffe

Oxana Radetskaya (Russia)

  • Genome-scale RNAi screening
  • Quantitative mass-spectrometry
  • Cell migration
  • Tumor Biology
  • Emerging properties

 USA

Franziska Völlmy (USA/Switzerland)

  • Fusion Proteins
  • Tyrosine Signaling
  • Global Quantitative Proteomics
  • Drug Resistance Networks

 

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Postdoctoral Fellow at Utrecht University, Heck lab

 

Undergraduate Students

Fabian Schmich (Germany)

  • MALDI Imaging
  • Machine Learning
  • Feature Selection

ETH, Basel, Switzerland

D-BSSE

Computational Biology Group

Mathias Blicher Bjerregård (Denmark)

  • Time Staggered Treatment Strategies
  • Statistical Data Analysis

Technical University of Denmark (DTU), Denmark

Rune Midjord Nielsen (Denmark)

  • Machine Learning
  • Artificial Neural Networks
  • Icing Models

 

Mathias Engel (Denmark)

  • Deep Learning Algorithms
  • Biological Forecasting
  • Cell Migration
  • State Based Phenotype Modeling
  • Image Analysis

 

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Scientific Officers

Dr Wei Xing (China)

  • Supercomputing
  • Cloud Federation
  • HPC Analytics Pipelines
The Institute of Cancer Research (ICR), UK

Dr Andreas Hadjiprocopis (Cyprus)

  • Machine Learning
  • Feature Extraction
  • Image baed HCS screening analysis
The Institute of Cancer Research (ICR), UK

Lene Holberg Blicher (Denmark)

  • Lab Management
  • HTP Project Management
  • Negotiations and Industrial Partnerships
  • Robotics & Infrastructure
  • MTAs, CDAs etc.
  • Scheduling
  • Cell & Molecular Biology
  • Cell Lines, Tissue Banks

Technical University of Denmark (DTU), Denmark

Simon Koplev (Denmark)

  • Time Staggered Treatment Strategies
  • Bayesian Drug Models
  • Monte Carlo Simulations
  • Synergistic Drug Effects
Mount Sinai School of Medicine, NYC, USA

Dr Jesper Ferkinghoff-Borg (Denmark)

  • Biological Forecasting
  • Non-linear Systems and Dynamics
  • Global Probabilistic Models
  • Multi-scale Modeling
  • Tissue/Tumor Models
  • Forcefield based Network Biology
  • Drug/Protein Networks
  • Molecular Dynamics

 

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Novo Nordisk

Regitse Bergen (Denmark)

 

  • Lab Management

Visiting Scientists

Dr Martin Bennetzen (Denmark)

  • Phosphorylation Networks
  • Phospho-proteomics
University of Southern Denmark, Denmark

Dr Chris Tan (Singapore)

  • Evolution
  • Tyrosine Signaling
  • Protein Architecture

Ce-M-M, Vienna, Austria

Lab of Prof Dr Giulio Superti-Furga

Dr Antonio Palmeri (Italy)

  • Kinase Inhibitor Networks
  • Drug Resistance


Uni Roma - Tor Vergata

Lab of Prof Dr Manuela Helmer Citterich


Conor Howard (USA)

  • Patient Derived Xenografts (PDX)
  • Mass-spectrometry/Proteomics
  • Tumor models

Grad school, UCSF, USA

Dr Gerard J. Ostheimer (USA)

  • Complex Systems Modeling
  • Network State Spaces
  • JNK multivariate network dynamics
  • Genome Dynamics
  • DNA Damage Response

UN Sustainable Energy For All Initiative